4). No improvement in SVR rates was observed after the additional combination with rs12980275 and rs8103142. Subgroup analysis revealed that in HCV type 1–infected patients with homozygous rs12979860CC genotype, the additional determination of rs8099917 had no significant effect on the prediction of SVR rate (rs12979860CC/rs8099917TT versus rs12979860CC: OR = 0.988 [0.83-1.18]; P = 0.896; rs12979860CC/rs8099917TG versus rs12979860CC: OR = 1.16 find more [0.49-2.71]; P = 0.736). In total, 197
of 294 (67%) patients with rs12979860CC/rs8099917TT and 17 of 24 (71%) with rs12979860CC/rs8099917TG achieved SVR. In patients with the heterozygous variants of the rs12979860 T nonresponder allele, the pattern of the rs8099917 SNP significantly affected the chances of achieving SVR (rs12979860CT/rs8099917TT Cabozantinib datasheet versus
rs12979860CT: OR = 1.29 [1.02-1.63]; P = 0.031; rs12979860CT/rs8099917TG versus rs12979860CT: OR = 0.845 [0.69-1.02]; P = 0.084). There were significant differences in SVR rates between carriers of rs12979860CT/rs8099917TT and carriers of rs12979860CT/rs8099917TG (55% versus 40%; P = 0.001). For the homozygous rs12979860 TT nonresponder genotype, a slight effect of rs8099917 SNP pattern on SVR rates was observed (rs12979860TT/rs8099917TT versus rs12979860TT/ rs8099917TG: 50% versus 42%), although the effect was not statistically significant (P > 0.05). Thus, additional genotyping of rs8099917 improves risk prediction for rs12979860CT carriers, but not for carriers
of rs12979860CC. Figure see more 5A illustrates the effect of combined analysis of rs12979860 and rs8099917 on SVR. Analysis of the confirmation cohort verified the significant difference in SVR between the combined genotypes, rs12979860CT/rs8099917TT and rs12979860CT/rs8099917TG (38% versus 21%; P = 0.018). All covariates, as well as rs12979860 and rs8099917, were included in the multivariate binary logistic regression model (Fig. 5B). The rs12979860CC/rs8099917TT genotype reached the highest levels in significance of association with SVR (860CC/917TT versus 860TT/917GG: OR = 4.63 [2.69-7.96]; P = 2.86 × 10−8), followed by the variant, rs12979860CC/rs8099917TG (860CC/917TG versus 860TT/917GG: OR = 3.88 [1.21-12.41]; P = 0.022), and the variant, rs12979860CT/rs8099917TT (OR = 2.13 [1.23-3.68]; P = 0.007). The double heterozygous rs12979860CT/rs8099917TG genotype was not significantly associated with SVR (P = 0.925). As expected, the additional determination of rs12980275 and rs8103142 did not improve the prediction of SVR. In the present study, we investigated the effect of combined genotyping of IL28 SNPs rs12979860, rs8099917, rs12980275, and rs8103142 on treatment outcome in HCV patients receiving the dual therapy of Peg-IFN-α and RBV.
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